Resources
Continue your reproducibility journey
More Examples
See more examples that demonstrate how the techniques/principles from this workshop can be applied in practice:
NHANES Manuscript Example
A complete Quarto Manuscripts project demonstrating {{< embed >}} syntax, script-based tables, and reproducible figures. Notice that the project is for demonstration purposes only, and the content itself is not scientifically meaningful. View the source folder on GitHub.
Quantitative Bias Analysis
A practical application: custom R functions combined with purrr::map() to iterate bias analysis across multiple scenarios. Demonstrates real-world use of workshop concepts. View the source file on GitHub.
Keep Learning
Core Tools
| Resource | What You’ll Learn |
|---|---|
| Quarto Documentation | Documents, presentations, websites, manuscripts |
| Happy Git with R | Git setup, workflows, troubleshooting for R users |
| gtsummary | Publication-ready summary and regression tables |
| ggplot2 Book | The complete guide to the grammar of graphics |
Advanced Topics
| Resource | When to Explore |
|---|---|
| targets User Manual | When your projects have complex dependencies |
| Oh Shit, Git!?! | When you need to fix Git mistakes |
| Quarto Gallery | When you want inspiration for new formats |
Using AI Effectively
- Learn how to use CLI agent tools
- Integrate them into your IDE tools
- Connect them to your GitHub repository
- Learn how to use AI to help with your research workflow
- Consider which tasks to delegate to AI
- Learn “AI fluency” via Anthropic Academy courses (highly recommended!)
Questions?
Contact the instructor: kshiba@bu.edu